@Article{1239909,
	address = {Amsterdam, The Netherlands, The Netherlands},
	author = {Casanova, Henri and Obertelli, Graziano and Berman, Francine and Wolski, Richard},
	title = {{The AppLeS Parameter Sweep Template: User-level middleware for the Grid}},
	date-Added = {2009-11-13 19:22:24 +0100},
	date-Modified = {2009-11-14 22:37:24 +0100},
	issn = {1058-9244},
	journal = {Sci. Program.},
	number = {3},
	pages = {111--126},
	publisher = {IOS Press},
	volume = {8},
	year = {2000}
}
			
@Article{SPdynamics,
  	 author = {Shirts, Michael R. and Pande, Vijay S.},
	 title = {{Mathematical Analysis of Coupled Parallel Simulations}},
 	 journal = {Phys. Rev. Lett.},
 	 volume = {86},
 	 number = {22},
 	 pages = {4983--4987},
 	 number = {4},
 	 year = {2001},
 	 month = {May},
 	 doi = {10.1103/PhysRevLett.86.4983},
 	 publisher = {American Physical Society}
}

@Article{Collier:2002wd,
	author = {Collier, A. and Gallego, J. and Klinck, R. and Cole, P. and Harris, S. and Harrison, G. and Aboul-ela, F. and Varani, G. and Walker, S.},
	title = {{A Conserved RNA Structure Within the HCV IRES elF3-Binding Site}},
	date-Added = {2008-12-17 21:25:32 +0100},
	date-Modified = {2008-12-17 21:39:39 +0100},
	journal = {Nature Structural Biology},
	number = {5},
	pages = {375--380},
	volume = {9},
	year = {2002}
}

@Article{Coolwalking,
   	author = {S Brown and  T Head-Gordon},
   	title = {{Cool Walking: A New Markov Chain Monte Carlo Sampling Method}},
   	journal = {Journal of Computational Chemistry},
  	volume = {24}, 
   	number = {1, 68-76},
   	year = {2003},
}	

@Article{pande_bj03,
	author = {Rhee, Young Min and Pande, Vijay S.},
	title = {{Multiplexed-Replica Exchange Molecular Dynamics Method for Protein Folding Simulation}},
	journal = {Biophysical Journal},
	volume = {84},
	number = {2},
	pages = {775-786},
	year = {2003},
	url = {http://www.biophysj.org/cgi/content/abstract/84/2/775}, 
	eprint = {http://www.biophysj.org/cgi/reprint/84/2/775.pdf} 
}

@Article{diane,
	author = {J. T. Moscicki},
	title = {{Distributed analysis environment for {HEP} and interdisciplinary applications}},
	journal = {Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
	volume = {502},
	number = {2-3},
	pages = {426 - 429},
	year = {2003},
	issn = {0168-9002},
	doi = {DOI: 10.1016/S0168-9002(03)00459-5},
	url = {http://www.sciencedirect.com/science/article/B6TJM-480C1TX-V/2/4d0dbeda4627cf2e89ac9447360e7460},
}

@Article{945450,
	address = {New York, NY, USA},
	author = {Ghemawat, Sanjay and Gobioff, Howard and Leung, Shun-Tak},
	doi = {http://doi.acm.org/10.1145/1165389.945450},
	issn = {0163-5980},
	journal = {SIGOPS Oper. Syst. Rev.},
	number = {5},
	pages = {29--43},
	publisher = {ACM},
	title = {The Google file system},
	volume = {37},
	bdsk-Url-1 = {http://doi.acm.org/10.1145/1165389.945450}
	year = {2003}
}


@inproceedings{mapreduce,
        address = {Berkeley, CA, USA},
        author = {Jeffrey Dean and Sanjay Ghemawat},
        booktitle = {OSDI'04: Proceedings of the 6th conference on Symposium on Opearting Systems Design \& Implementation},
        date-Added = {2008-02-23 20:47:01 -0600},
        date-Modified = {2008-05-12 23:43:10 +0200},
        location = {San Francisco, CA},
        pages = {137--150},
        publisher = {USENIX Association},
        title = {{MapReduce: Simplified Data Processing on Large Clusters}},
        year = {2004}
}
        
    

@Article{KalmanPaper,
	author = {Kalman, R. E. },
	title = {{A New Approach to Linear Filtering and Prediction Problems}},
	article-id = {347166},
	keywords = {ee520, filtering, kalman-filtering},
	posted-at = {2005-10-10 20:28:49},
	priority = {2},
	url = {http://www.cs.unc.edu/~welch/kalman/media/pdf/Kalman1960.pdf}
}


@inproceedings{spice_sc05,
        address = {Washington, DC, USA},
        author = {Shantenu Jha and Peter Coveney and Matt Harvey},
        booktitle = {SC '05: Proceedings of the 2005 ACM/IEEE conference on Supercomputing},
        doi = {http://dx.doi.org/10.1109/SC.2005.65},
        isbn = {1-59593-061-2},
        pages = {70},
        publisher = {IEEE Computer Society},
        title = {{SPICE: Simulated Pore Interactive Computing Environment}},
        year = {2005},
        bdsk-url-1 = {\url{http://dx.doi.org/10.1109/SC.2005.65}}
}
 
@Article{1239657,
	address = {Amsterdam, The Netherlands, The Netherlands},
	author = {K. Keahey and I. Foster and T. Freeman and X. Zhang},
	date-Added = {2008-05-24 14:39:44 +0200},
	date-Modified = {2008-05-24 14:40:40 +0200},
	issn = {1058-9244},
	journal = {Scientific Programming},
	number = {4},
	pages = {265--275},
	publisher = {IOS Press},
	title = {{Virtual Workspaces: Achieving Quality of Service and Quality of Life in the Grid}},
	volume = {13},
	year = {2005}
}

@book{DataAssim,  
	author = {Geir Evensen},  
	title = {{Data Assimilation: The Ensemble Kalman Filter}},    
	isbn = {354038300X},  
	publisher = {Springer-Verlag New York, Inc.},  
	address = {Secaucus, NJ, USA},
	year = {2006}
} 

        

@Article{DO2006,
  	author = {Gu, Yaqing and Dean S. Oliver},
  	title = {{The ensemble Kalman filter for continuous updating of reservoir simulation models}},
  	journal = {Journal of Engineering Resources Technology},
  	volume = {128},
  	number = {1},
  	pages = {79-87},
	year = {2006}
}

@inproceedings{bigtable2006,
	address = {Berkeley, CA, USA},
	author = {Chang, Fay and Dean, Jeffrey and Ghemawat, Sanjay and Hsieh, Wilson C. and Wallach, Deborah A. and Burrows, Mike and Chandra, Tushar and Fikes, Andrew and Gruber, Robert E.},
	booktitle = {OSDI '06: Proceedings of the 7th USENIX Symposium on Operating Systems Design and Implementation},
	location = {Seattle, WA},
	pages = {15--15},
	publisher = {USENIX Association},
	title = {{Bigtable: a distributed storage system for structured data}},
	year = {2006}
}       

@inproceedings{1267323,
	address = {Berkeley, CA, USA},
	author = {Chang, Fay and Dean, Jeffrey and Ghemawat, Sanjay and Hsieh, Wilson C. and Wallach, Deborah A. and Burrows, Mike and Chandra, Tushar and Fikes, Andrew and Gruber, Robert E.},
	booktitle = {OSDI '06: Proceedings of the 7th USENIX Symposium on Operating Systems Design and Implementation},
	location = {Seattle, WA},
	pages = {15--15},
	publisher = {USENIX Association},
	title = {{Bigtable: a distributed storage system for structured data}},
	year = {2006}
}

@techreport{ogf-gfd-70,
  	author = {Shantenu Jha and Andre Merzky},
  	title = {{A Collection of Use Cases for a Simple API for Grid Applications}},
 	publisher = {Grid Forum Document GFD.70},
  	type = {OGF Informational Document},
  	institution = {Open Grid Forum},
 	url  =  {http://www.ggf.org/documents/GFD.70.pdf},
  	year = {2006}
}

@techreport{ogf-gfd-71,
  	author = {Shantenu Jha and Andre Merzky},
  	title = {{A Requirements Analysis for a Simple API for Grid Applications}},
  	publisher = {Grid Forum Document GFD.71},
  	type = {{OGF Informational Document}},
  	institution = {{Open Grid Forum}},
  	url = {http://www.ggf.org/documents/GFD.71.pdf},
	year = {2006}
}

@article{1294281,
	address = {New York, NY, USA},
	author = {DeCandia, Giuseppe and Hastorun, Deniz and Jampani, Madan and Kakulapati, Gunavardhan and Lakshman, Avinash and Pilchin, Alex and Sivasubramanian, Swaminathan and Vosshall, Peter and Vogels, Werner},
	doi = {http://doi.acm.org/10.1145/1323293.1294281},
	issn = {0163-5980},
	journal = {SIGOPS Oper. Syst. Rev.},
	number = {6},
	pages = {205--220},
	publisher = {ACM},
	title ={{Dynamo: amazon's highly available key-value store}},
	volume = {41},
	bdsk-Url-1 = {http://doi.acm.org/10.1145/1323293.1294281},
	Year = {2007}
}
	
@inproceedings{LiEnKF07,
	author = {Xin Li and Christopher White and Zhou Lei and Gabrielle Allen},
	title = {{Reservoir Model Updating by Ensemble Kalman Filter-Practical Approaches Using Grid Computing Technology}},
	booktitle = {Petroleum Geostatistics  2007},
	address = {Cascais,Portugal},
	month = {August},
	year = {2007}
}

              
@Article{DO2007,
  	author = {Gu, Yaqing and Dean S. Oliver},
 	title = {{An Iterative Ensemble Kalman Filter for Multiphase Fluid Flow Data Assimilation}},
  	journal = {SPE Journal},
  	volume = {12},
  	number = {4},
  	pages = {438-446},
	year = {2007}
 }
      
@inproceedings{comethpdc,
 	address = {New York, NY, USA},
	author = {Zhen Li and Manish Parashar},
 	title = {{A computational infrastructure for grid-based asynchronous parallel applications}},
 	booktitle = {HPDC '07: Proceedings of the 16th international symposium on High performance distributed computing},
 	isbn = {978-1-59593-673-8},
 	pages = {229--230},
 	location = {Monterey, California, USA},
 	doi = {http://doi.acm.org/10.1145/1272366.1272404},
 	publisher = {ACM},
	year = {2007}
 }
 
 @Article{dryad,
	address = {New York, NY, USA},
	author = {Isard, Michael and Budiu, Mihai and Yu, Yuan and Birrell, Andrew and Fetterly, Dennis},
	doi = {http://doi.acm.org/10.1145/1272998.1273005},
	issn = {0163-5980},
	journal = {SIGOPS Oper. Syst. Rev.},
	number = {3},
	pages = {59--72},
	publisher = {ACM},
	title = {Dryad: distributed data-parallel programs from sequential building blocks},
	volume = {41},
	bdsk-Url-1 = {http://doi.acm.org/10.1145/1272998.1273005}
	year = {2007}
}

@techreport{ogf-gfd-90,
  	author = {Tom Goodale and Shantenu Jha and Hartmut Kaiser andThilo Kielmann andPascal Kleijer and Andre Merzky andJohn Shalf and Christopher Smith},
  	title = {{A Simple API for Grid Applications (SAGA)}},
  	publisher = {Grid Forum Document GFD.90},
  	type = {OGF Proposed Recommendation Document},
  	institution  = {Open Grid Forum},
	year =  {2007}
}

@techreport{ogf-gwd-r-96,
  	author  = {Andre Merzky and Andre Luckow and Derek Simmel},
  	title  = {{SAGA Extension: Checkpoint and Recovery API (CPR)}},
  	publisher = {Grid Forum Document GFD.XX},
  	type = {Draft for an OGF Proposed Recommendation Document},
  	institution  = {Open Grid Forum},
  	note  = {http://www.ogf.org/OGF27/materials/1767/saga_cpr.pdf},
	year  = {2008}
  	
}


@inproceedings{1413421,
	address = {Piscataway, NJ, USA},
	author = {Deelman, Ewa and Singh, Gurmeet and Livny, Miron and Berriman, Bruce and Good, John},
	booktitle = {SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing},
	date-Added = {2009-11-14 18:54:00 +0100},
	date-Modified = {2009-11-14 18:54:00 +0100},
	isbn = {978-1-4244-2835-9},
	location = {Austin, Texas},
	pages = {1--12},
	publisher = {IEEE Press},
	title = {{The cost of doing science on the cloud: the Montage example}},
	year = {2008}
}
	
@Article{allpairs, 
	author = {Christopher Moretti, Jared Bulosan, Douglas Thain, and Patrick Flynn}, 
	published = {IEEE International Parallel and Distributed Processing Symposium, (IPDPS)}, 
	title = {{All-Pairs: An Abstraction for Data Intensive Cloud Computing}},
	year = {2008}
}


@paper{buyya_hpcc, 
	address = {Los Alamitos, CA, USA},
	author = {Rajkumar Buyya, and et al}, 
	title = {{Market-Oriented Cloud Computing: Vision, Hype, and Reality for Delivering IT Services as Computing Utilities}}, 
	publisher = {Keynote Paper, Proceedings of the 10th IEEE International Conference on High Performance Computing and Communications (HPCC 2008, IEEE CS Press, )} 
	month = {September} 
	date = {25-27},  
	location = {Dalian, China}, 
	url = {http://www.gridbus.org/papers/hpcc2008_keynote_cloudcomputing.pdf}
	year = {2008}
}
           	        
@inproceedings{1383434,
	address = {New York, NY, USA},
	author = {Sotomayor, Borja and Keahey, Kate and Foster, Ian},
	booktitle = {HPDC '08: Proceedings of the 17th international symposium on High performance distributed computing},
	doi = {http://doi.acm.org/10.1145/1383422.1383434},
	isbn = {978-1-59593-997-5},
	location = {Boston, MA, USA},
	pages = {87--96},
	publisher = {ACM},
	title = {{Combining batch execution and leasing using virtual machines}},
	bdsk-Url-1 = {http://doi.acm.org/10.1145/1383422.1383434},
	year = {2008}	
}

@inproceedings{10443865,
	author = {Youseff, Lamia and Butrico, Maria and Da Silva Dilma},
	booktitle = {GCE'08: Grid Computing Environments Workshop},
	doi = {10.1109/GCE.2008.4738443},
	isbn = {978-1-4244-2860-1},
	location = {Austin, TX},
	publisher = {IEEE},
	title = {{Toward a Unified Ontology of Cloud Computing}},
	bdsk-Url-1 = {http://dx.doi.org/10.1109/GCE.2008.4738443},
	year = {2008}
}

@inproceedings{Hill,
	author = {Evangelinos, Constantinos and Hill, Chris N.},
	booktitle = {Cloud Computing and its Applications (CCA-08)},
	location = {Chicago, IL},
	title = {{Cloud Computing for parallel Scientific {HPC} Applications: Feasibility of Running Coupled Atmosphere-Ocean Climate Models on {Amazon's EC2}},
	url = {\url{http://www.cca08.org/papers/Paper34-Chris-Hill.pdf}},
	bdsk-Url-1 = {http://www.cca08.org/papers/Paper34-Chris-Hill.pdf},
	year = {2008}
}
	
@inproceedings{rehr-2008,
	author = {Rehr, J. J. and Gardner, J. P. and Prange, M. and Svec, L. and Vila, F.},
	institution = {arXiv [http://arXiv.org/oai2] (United States)},
	Keywords = {Condensed Matter - Materials Science, Computer Science - Distributed, Parallel, and Cluster Computing, Physics - Computational Physics},
	location = {http://www.scientificcommons.org/39451627},
	title = {{Scientific Computing in the Cloud}},
	url = {http://arxiv.org/abs/0901.0029},
	bdsk-Url-1 = {http://arxiv.org/abs/0901.0029},
	year = {2008}
}

@inproceedings{5417438,
	author = {Hoffa, Christina and Mehta, Gaurang and Deelman, Ewa and Freeman, Timothy and Keahey, Kate and Berriman, Bruce and Good, John},
	booktitle = {SWBES08: Challenging Issues in Workflow Applications},
	title = {{On the Use of Cloud Computing for Scientific Workflows}},
	year = {2008}
}
	
@inproceedings{saga_tg08, 
	author={S. Jha and Y. El Khamra and H. Kaiser and A. Merzky and O. Weidner},
	title = {{Developing Large-Scale Adaptive Scientific Applications with Hard to Predict Runtime Resource Requirements}},
	booktitle ={Proceedings of TeraGrid08}, 
	url = {http://tinyurl.com/5du32j},
	year = {2008}
}

@Article{10.1109/MC.2008.470,
	address = {Los Alamitos, CA, USA},
	author = {Nancy Wilkins-Diehr and Dennis Gannon and Gerhard Klimeck and Scott Oster and Sudhakar Pamidighantam},
	doi = {http://doi.ieeecomputersociety.org/10.1109/MC.2008.470},
	issn = {0018-9162},
	journal = {Computer},
	pages = {32-41},
	publisher = {IEEE Computer Society},
	title = {{TeraGrid Science Gateways and Their Impact on Science}},
	volume = {41},
	bdsk-Url-1 = {http://doi.ieeecomputersociety.org/10.1109/MC.2008.470},
	year = {2008}
	
}
	
@Article{dirac, 
	author = {A. Tsaregorodtsev et al.}, 
	title = {{DIRAC: A community Grid solution}}, 
	published: {J. Phys.: Conf. Ser.},
	page = {119} ,
	id =  {062048},
	year = {2008}
}


@link{remd-manager_url, 
	url = {https://svn.cct.lsu.edu/repos/saga-projects/applications/REMDgManager/src/main.py}, 
	year={2008}
}

@link{glite, 
	author={gLite}, 
	note={http://glite.web.cern.ch/glite/}, 
	year={2008}
}

@inproceedings{repex_mpig,
	address = {New York, NY, USA},
	author = {Steven Manos and Marco Mazzeo and Owain Kenway and Peter V. Coveney and Nicholas T. Karonis and Brian Toonen},
 	title = {{Distributed MPI Cross-Site Run Performance Using MPI}},
	booktitle = {HPDC '08: Proceedings of the 17th international symposium on High performance distributed computing},
 	isbn = {978-1-59593-997-5},
 	pages = {229--230},
 	location = {Boston, MA, USA},
 	doi = {http://doi.acm.org/10.1145/1383422.1383459},
 	publisher = {ACM},
	year = {2008}
 }


@journal{cloud-grid-autonomics, 
	author = {H. Kim, Y. el-Khamra, S. Jha and M. Parashar}
	titile = {{An Autonomic Approach to Integrated HPC Grid and Cloud Usage}},
	publisher = {IEEE eScience},
	location = {Oxford},
	year = {2008}
}

@inproceedings{you08,

	author = {Youseff, L. and Butrico, M. and Da Silva, D.},
	booktitle = {Grid Computing Environments Workshop, 2008. GCE '08},
	citeulike-Article-Id = {5770192},
	citeulike-Linkout-0 = {http://dx.doi.org/10.1109/GCE.2008.4738443},
	doi = {10.1109/GCE.2008.4738443},
	keywords = {cloud},
	month = {Nov},
	pages = {1--10},
	posted-At = {2010-01-19 12:24:19},
	priority = {0},
	title = {{Toward a Unified Ontology of Cloud Computing}},
	url = {http://dx.doi.org/10.1109/GCE.2008.4738443},
	bdsk-Url-1 = {http://dx.doi.org/10.1109/GCE.2008.4738443}, 
	year = {2008}
}

 @Article{1542058,
	address = {Chichester, UK},
	author = {Jha, Shantenu and Merzky, Andre and Fox, Geoffrey},
	doi = {http://dx.doi.org/10.1002/cpe.v21:8},
	issn = {1532-0626},
	journal = {Concurr. Comput. : Pract. Exper.},
	number = {8},
	pages = {1087--1108},
	publisher = {John Wiley and Sons Ltd.},
	title = {{Using clouds to provide grids with higher levels of abstraction and explicit support for usage modes}},
	volume = {21},
	bdsk-Url-1 = {http://dx.doi.org/10.1002/cpe.v21:8}
	year = {2009}
}
	
 @inproceedings{montage_pegasus_ec2,
	author = {Gideon Juve and Ewa Deelman and Karan Vahi and Garuang Mehta and Bruce Berriman and Benjamin P. Berman and Phil Maechling},
	booktitle = {Workshop on Cloud-based Services and Applications in conjunction with 5th IEEE Internation Conference on e-Science (e-Science 2009)},
	location = {Oxford UK},
	title = {{Scientific Workflow Applications on Amazon EC2}},
	year = {2009}
}
	
 @book{fourthparadigm,
	abstract = {A collection of essays expanding on the vision of pioneering computer scientist Jim Gray for a new, fourth paradigm of discovery based on data-intensive science.},
	author = {Hey, Anthony J. G. and Tansley, Stewart and Tolle, Kristin M.},
	booktitle = {The Fourth Paradigm: Data-Intensive Scientific Discovery},
	url = {http://research.microsoft.com/en-us/collaboration/fourthparadigm/},
	isbn = {9780982544204},
	posted-At = {2009-12-21 11:47:52},
	priority = {2},
	publisher = {Microsoft Research},
	title = {The Fourth Paradigm: Data-Intensive Scientific Discovery},
	url = {http://research.microsoft.com/en-us/collaboration/fourthparadigm/},
	bdsk-Url-1 = {http://research.microsoft.com/en-us/collaboration/fourthparadigm/},
	year = {2009}
}

@inproceedings{co2_escience2009,
	author = {Yaakoub El Khamra and Shantenu Jha},
	booktitle = {Microsoft Research eScience Workshop, Pittsburgh},
	url = {http://research.microsoft.com/en-us/UM/redmond/events/eScience2009/17863/lecture.htm},
	location = {Pittsburgh, PA},
	title = {{Modelling Data-Driven CO$_2$ Sequestration Using Distributed HPC CyberInfrastructure}},
	year = {2009}
}
	                 
@Article{10.1109/e-Science.2009.58,
	address = {Los Alamitos, CA, USA},
	author = {Hyunjoo Kim and Yaakoub el-Khamra and Shantenu Jha and Manish Parashar},
	title = {{An Autonomic Approach to Integrated HPC Grid and Cloud Usage}},
	journal ={e-Science and Grid Computing, International Conference on},
	volume = {0},
	isbn = {978-0-7695-3877-8},
	pages = {366-373},
	doi = {http://doi.ieeecomputersociety.org/10.1109/e-Science.2009.58},
	publisher = {IEEE Computer Society},
	year = {2009}
}
	
@Article{10.1109/GPC.2009.17,
	author = {Andre Merzky and Katerina Stamou and Shantenu Jha},
	title = {{Application Level Interoperability between Clouds and Grids}},
	journal ={Grid and Pervasive Computing Conference},
	volume = {0},
	isbn = {978-0-7695-3677-4},
	pages = {143-150},
	doi = {http://doi.ieeecomputersociety.org/10.1109/GPC.2009.17},
	publisher = {IEEE Computer Society},
	address = {Los Alamitos, CA, USA},
	year = {2009}
}

	
@Article{repex_ptrsa,
	author = {A. Luckow and S. Jha and J. Kim and A. Merzky and B. Schnor},
	date-Added = {2008-11-23 19:14:05 +0100},
 	date-Modified = {2009-01-18 21:16:54 +0100},
	journal = {Royal Society Philosophical Transactions A},
	title = {{Adaptive Replica-Exchange Simulations}},
	year = {2009}
}

@paper{azure_drug_discovery,
	author = {Paul Watson and David Leahy and Hugo Hiden and Simon Woodman and Joanna Berry},
	booktitle = {Microsoft External Research Symposium},
	title = {{An Azure Science Cloud for Drug Discovery}},
	year = {2009}
}

@inproceedings{gmac09,
	author = {Yaakoub El Khamra and Shantenu Jha},
  	title = {Title: {Developing Autonomic Distributed Scientific Applications: A Case Study From History Matching Using Ensemble Kalman-Filters}},
 	booktitle = {Workshop on Grids Meet Autonomic Computing (GMAC), Sixth International Conference on Autonomic Computing, 2009. ICAC '09 (Barcelona)},
  	publisher = {IEEE},
  	year = {2009}
}

@inproceedings{enkf-gmac09,
 	author = {El-Khamra, Yaakoub and Jha, Shantenu},
	title = {{Developing autonomic distributed scientific applications: a case study from history matching using ensemblekalman-filters}},
	booktitle = {GMAC '09: Proceedings of the 6th international conference industry session on Grids meets autonomic computing},
 	isbn = {978-1-60558-578-9},
 	pages = {19--28},
 	location = {Barcelona, Spain},
 	doi = {http://doi.acm.org/10.1145/1555301.1555304},
 	publisher = {ACM},
 	address = {New York, NY, USA},
	year = {2009}
 
 }

@conference{dpagrid2009, 
  	title = {Critical Perspectives on Large-Scale Distributed Applications and Production Grids}, 
	publication = {Proceedings of the 10th IEEE/ACM International Conference on Grid Computing (GRID09)}, 
	link = {http://www.cct.lsu.edu/~sjha/dpa_publications/dpa_grid2009.pdf},
	year = {2009} 
}
                  
@conference{luckow2009adaptive,
  	author = {Luckow, A. and Jha, S. and Kim, J. and Merzky, A. and Schnor, B.},
	title = {{Adaptive distributed replica--exchange simulations}},
 	booktitle = {Theme Issue of the Philosophical Transactions of the Royal Society A: Crossing Boundaries: Computational Science, E-Science and Global E-Infrastructure Proceedings of the UK e-Science All Hands Meeting},
  	volume = {367},
 	year = {2009},
}

@conference{repex_ptrs,
  	author={Luckow, A. and Jha, S. and Kim, J. and Merzky, A. and Schnor, B.},
	title={{Adaptive Distributed Replica--Exchange Simulations}},
  	booktitle={Theme Issue of the Philosophical Transactions of the Royal Society A},
  	volume={367},
  	year={2009},

}

@Article{S-Sehgal:2009kx,
	author = {S. Sehgal and A. Merzky and S Jha and M. Erdelyim},
	date-Added = {2010-05-29 09:56:10 +0200},
	date-Modified = {2010-05-29 10:08:14 +0200},
	journal = {submitted to: Future Generation Computing Systems, as special issue of selected papers from Grid and Pervasive Computing},
	title = {{Understanding Application Level Interoperability: Scaling-Out MapReduce From High-Performance Grids to Web-Scale Resources}},
	year = {2009}
}
@techreport{Armbrust:EECS-2009-28,
	author = {Armbrust, Michael and Fox, Armando and Griffith, Rean and Joseph, Anthony D. and Katz, Randy H. and Konwinski, Andrew and Lee, Gunho and Patterson, David A. and Rabkin, Ariel and Stoica, Ion and Zaharia, Matei},
	institution = {EECS Department, University of California, Berkeley},
	month = {Feb},
	number = {UCB/EECS-2009-28},
	title = {Above the Clouds: A Berkeley View of Cloud Computing},
	url = {http://www.eecs.berkeley.edu/Pubs/TechRpts/2009/EECS-2009-28.html},
	bdsk-Url-1 = {http://www.eecs.berkeley.edu/Pubs/TechRpts/2009/EECS-2009-28.html}
	year = {2009}
}
	
@paper{nist_cloud,
	author = {{Peter Mell and Tim Grance}},
	url = {http://csrc.nist.gov/groups/SNS/cloud-computing/},
	title = {The {NIST} Definition of Cloud Computing},
	year = {2009}
}

@forumpaper{occi,
	Author = {{Thijs Metsch et.\,al}},
	publisher = {http://www.ogf.org/documents/GFD.162.pdf},
	keywords = {Open Grid Forum},
	title = {{Open Cloud Computing Interface Specification}},
	year = {2010}
}

@inproceedings{enkf_hybrid_grid_cloud,
	title = {{Exploring Application and Infrastructure Adaptations on Hybrid Grid-Cloud Infrastructure}},
	author = {Hyunjoo Kim and Yaakoub el-Khamra and S. Jha and Manish Parashar},
	booktitle = {First Workshop on Scientific Cloud Computing (Science Cloud 2010)},
	publisher = {ACM},
	year = {2010}
}

@book{Krishnan:2010nx,
	author = {Sriram Krishnan},
	publisher = {O'Reilly Media},
	title = {{Programming Windows Azure}},
	year = {2010}
}
	
@inbook{Jha:2010kx,
	author = {Shantenu Jha and Daniel S. Katz and Andre Luckow and Andre Merzky and Katerina Stamou},
	chapter = {{Understanding Scientific Applications for Cloud Environments}},
	date-Added = {2010-06-05 22:03:44 +0200},
	date-Modified = {2010-06-05 22:07:01 +0200},
	editor = {Rajkumar Buyya and James Broberg},
	publisher = {Wiley},
	title = {Cloud Computing: Principles and Paradigms },
	year = {2010}
}

@inproceedings{azure_blast,
	author = {Wei Lu and Jared Jackson and Roger Barga},
	booktitle = {First Workshop on Scientific Cloud Computing (Science Cloud 2010)},
	publisher = {ACM},
	title = {{AzureBlast: A Case Study of Developing Science Applications on the Cloud}},
	year = {2010}
}



@misc{montagecloud,
	author = {Ewa Deelman et al,}, 
	title = {{The Cost of Doing Science on the Cloud: The Montage Example}},
	keywords = {Proceedings of SC08}, 
	address = {Austin, Texas},
	url = {http://pegasus.isi.edu/publications/2008/deelman_sc08_corrected.pdf}
}
		
@link{codeplex, 
	url={http://www.codeplex.com}
}

@link{remd-manager_url, 
	url = {https://svn.cct.lsu.edu/repos/saga-projects/applications/REMDgManager/src/main.py}
}

@link{gridrpc_url, 
	author={GridRPC}, 
	link = {http://forge.ogf.org/sf/projects/gridrpc-wg} 
}

@doclink{saga-core,
	author = {T Goodale et al},
	url = {http://www.ogf.org/documents/GFD.90.pdf}
}

@link{novelsubmissionmode,
	author = {P. Chakraborty and S. Jha and D. Katz},
	title = {{Novel Submission Modes of Tightly-coupled Jobs Across Distributed Resources}},
	publisher = { Phil. Trans. of the Royal Society A}
}


@link{saga_tg08, 
	title = {{Developing Large-Scale Adaptive Scientific Applications with Hard to Predict Runtime Resource Requirements}}, 
	publisher  = {Proceedings of TeraGrid08}, 
	url = {http://tinyurl.com/5du32j}
}


@conference{repex_ptrsa, 
	title = {{Adaptive Distributed Replica Exchange}},
	publisher = {Phil. Transactions of the Royal Society London A}
}

@misc{amazons3,
	keywords = {Amazon S3},
	url = {http://s3.amazonaws.com},
	title = {{Amazon S3 Web Service}}
}

@link{glite, 
	url={http://glite.web.cern.ch/glite/}

@link{ogf_web,
        author = {Open Grid Forum},
        url  = {http://www.ogf.org/}
}

@paper{novelsubmissionmode,
	author = {P. Chakraborty and S. Jha and D. Katz},
	title = {{Novel Submission Modes of Tightly-coupled Jobs Across Distributed Resources}},
	publisher = {Phil. Trans. of the Royal Society A}
}

@paper{dpa-paper, 
	author = {S. Jha et al.},
	title = {{\em Programming Abstractions for Large-scale Distributed Applications}}, 
	publisher = {ACM Computing Surveys},
         url = \url{http://www.cct.lsu.edu/~sjha/publications/dpa_surveypaper.pdf}
}
                  
@link{remd-manager_url, 
	url={https://svn.cct.lsu.edu/repos/saga-projects/applications/REMDgManager/src/main.py}
}

@link{saga-core,
	author = {T Goodale and et al},
	url = {http://www.ogf.org/documents/GFD.90.pdf}
}

@link{LONI_web,
        author = {Louisiana Optical Network Initiative},
        url  = {http://www.loni.org/}
} 

@tutorial{bigjob_cloud_tutorial, 
	title = {{BigJob Tutorials}},
	url = {http://saga.cct.lsu.edu/projects/abstractions/bigjob-a-saga-based-pilot-job-implementation}
}

@ec2link{new-ec2, 
	url = {http://aws.typepad.com/aws/2009/10/two-new-ec2-instance-types-additional-memory.html}
}

@link{nanocmos, 
	url = {http://www.nanocmos.ac.uk/}
}

@link{sgi_cyclone,
	url = {http://www.sgi.com/products/hpc_cloud/cyclone/index.html},
	title = {{SGI Cyclone -- HPC Cloud}}
}

@link{dagman,
	url = {http://www.cs.wisc.edu/condor/dagman/},
	title = {{Condor DAGMAn}}
}

@link{win_azure,
	url = {{http://www.microsoft.com/windowsazure/},
	title = {{Windows Azure}}
}

@link{rackspacecloud,
	url = {http://www.rackspacecloud.com/},
	title = {{Rackspace Cloud}}
}

@link{rackspacecloudfiles,
	url = {http://www.rackspacecloud.com/cloud_hosting_products/files/},
	title = {{Rackspace Cloud Files}}
}

@link{walrus,
	url = {http://open.eucalyptus.com/wiki/EucalyptusStorage_v1.4},
	title = {{Eucalyptus Walrus}}
}

@link{sciencecloud,
	url = {http://scienceclouds.org/},
	title = {{Science Cloud}}
}

@link{futuregrid,
	url = {http://www.futuregrid.org/},
	title = {{Future Grid}}
}
@link{gogrid,
	url = {http://www.gogrid.com/},
	title = {{GoGrid Cloud Hosting}}
}


@link{gae,
	url = {http://code.google.com/appengine/},
	title = {{Google App Engine}}
}

@link{amazon_ec2,
	publisher = {\url{http://ec2.amazonaws.com}},
	keywords = {Amazon EC2},
	title = {{Amazon EC$^2$ Web Service}}
}

@link{amazon_elastic_mapreduce,
	publisher = {http://aws.amazon.com/elasticmapreduce/},
	keywords = {Amazon Elastic},
	title = {{Amazon Elastic MapReduce}}
}

@link{Hadoop:2008mz,
	publisher = {http://hadoop.apache.org/},
	keywords = {Hadoop},
	title = {{Hadoop: Open Source Implementation of MapReduce}}
}

@link{cloudstore_web,
	url = {http://kosmosfs.sourceforge.net},
	title = {{CloudStore}}
}

@link{hdfs_web,
	url = {{http://hadoop.apache.org/common/docs/current/hdfs_design.html},
	title = {{HDFS}}
}

@link{hbase_web,
	url = {http://hadoop.apache.org/hbase/},
	title = {{HBase}}
}