[DEFAULT] # RE Manager settings arguments: NPT.conf total_number_replica: 2 number_of_mpi_processes : 16 exchange_count : 3 stage_in_file : 310K-init.coor 310K-init.xsc NPT.conf parm99bs0_all.prm sbox_init.pdb sbox_init.psf temperature : 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 [QB] # resource specific settings rm_url: gram://qb1.loni.org/jobmanager-pbs file_url: gsiftp://qb1.loni.org number_nodes: 32 executable: /usr/local/packages/namd-2.6-mvapich-1.0-intel10.1/namd2 jobtype: mpi working_dir_root: /work/luckow/replica/ allocation: loni_jha_big queue: workq userproxy: