#!/bin/sh
#$ -q normal
# the queue to be used.  
#$ -M sdubbaka@cct.lsu.edu
#$ -pe 16way 32
#$ -l h_rt=24:00:00
# requested Wall-clock time.
#
#$ -V
#
#$ -o sl15stdout32
#$ -e sl15stderr32
# name of the standard out file to be "output-file".
#
#$ -N gustav_archive_ascii
# name of the job (that will appear on executing the qstat command) to be "syschk". 
#
#$ -A TG-MCA02N014 
# Following are non PBS commands. PLEASE ADOPT THE SAME EXECUTION SCHEME 
# i.e. execute the job by copying the necessary files from your home directpory
# to the scratch space, execute in the scratch space, and copy back 
# the necessary files to your home directory.  
#
set -x
WORK_DIR=/work/sdubba2/gustav_new

NPROCS=32

# REQUIRED for PBS to work. 
# copies necessary files from home directory to scratch space. 
cd $WORK_DIR

echo "Creating the simulation"
fort="fort.14"
option1=1
option2=2

echo "Calling adcprep for the first time"
./adcprep <<EOF
$NPROCS
$option1
$fort
EOF

echo "Calling adcprep for the second time"
./adcprep <<EOF
$NPROCS
$option2
EOF

cat $PE_HOSTFILE > NODES || true
# changing the working directory to the scratch space
echo "Calling padcirc"
date
env
# ibrun -machinefile $PBS_NODEFILE -np $NPROCS ./padcirc
ibrun tacc_affinity ./padcirc
date
#  executes the executable. 

echo "Done."