#!/bin/sh
#PBS -q checkpt
# the queue to be used.  
#PBS -M aaa@abc.com
#PBS -l nodes=n:ppn=p
#PBS -l walltime=hh:mm:ss
# requested Wall-clock time.
#
#PBS -V
#
#PBS -o sl15stdout32
#PBS -e sl15stderr32
# name of the standard out file to be "output-file".
#
#PBS -N jobname
# name of the job (that will appear on executing the qstat command) to be "syschk". 
#
#PBS -A allocation
# Following are non PBS commands. PLEASE ADOPT THE SAME EXECUTION SCHEME 
# i.e. execute the job by copying the necessary files from your home directpory
# to the scratch space, execute in the scratch space, and copy back 
# the necessary files to your home directory.  
#
WORK_DIR=/work/username/hurricane

export NPROCS=`wc -l $PBS_NODEFILE |gawk '//{print $1}'`

# REQUIRED for PBS to work. 
# copies necessary files from home directory to scratch space. 
cd $WORK_DIR

echo "Creating the simulation"
fort="fort.14"
option1=1
option2=2

echo "Calling adcprep for the first time"
./adcprep <<EOF
$NPROCS
$option1
$fort
EOF

echo "Calling adcprep for the second time"
./adcprep <<EOF
$NPROCS
$option2
EOF

# changing the working directory to the scratch space
echo "Calling padcirc"
date
mpirun -machinefile $PBS_NODEFILE -np $NPROCS ./padcirc
date
#  executes the executable. 

echo "Done."