@inproceedings{allen2000cactus,
  title={The cactus code: A problem solving environment for the grid},
  author={Allen, G. and Benger, W. and Goodale, T. and Hege, H.C. and Lanfermann, G. and Merzky, A. and Radke, T. and Seidel, E. and Shalf, J.},
  booktitle={High-Performance Distributed Computing, 2000. Proceedings. The Ninth International Symposium on},
  pages={253--260},
  year={2000},
  organization={IEEE}
}
@incollection{eskilsson2009parallel,
    author = {Eskilsson, Claes and El-Khamra, Yaakoub and Rideout, David and Allen, Gabrielle and Chen, Q. and Tyagi, Mayank},
    title = {A Parallel High-Order Discontinuous Galerkin Shallow Water Model},
    booktitle = {Computational Science – ICCS 2009},
    series = {Lecture Notes in Computer Science},
    editor = {Allen, Gabrielle and Nabrzyski, Jaroslaw and Seidel, Edward and van Albada, Geert and Dongarra, Jack and Sloot, Peter},
    publisher = {Springer Berlin / Heidelberg},
    isbn = {978-3-642-01969-2},
    keyword = {Computer Science},
    pages = {63-72},
    volume = {5544},
    year = {2009}
}

@article{gavish,
    author  = "Matan Gavish and David Donoho",
    title   = "{A} {U}niversal {I}dentifier for {C}omputational {R}esults",
    journal = "Procedia Computer Science",
    volume = "4",
    pages = "637 - 647",
    year = "2011",
    note = "Proceedings of the International Conference on Computational Science, ICCS 2011",
    issn = "1877-0509",
    doi = "10.1016/j.procs.2011.04.067",
    url = "http://www.sciencedirect.com/science/article/pii/S1877050911001256",
}

@article{brammer,
    title = "Paper Mâché: Creating Dynamic Reproducible Science",
    journal = "Procedia Computer Science",
    volume = "4",
    pages = "658 - 667",
    year = "2011",
    note = "Proceedings of the International Conference on Computational Science, ICCS 2011",
    issn = "1877-0509",
    doi = "10.1016/j.procs.2011.04.069",
    url = "http://www.sciencedirect.com/science/article/pii/S187705091100127X",
    author = "Grant R. Brammer and Ralph W. Crosby and Suzanne J. Matthews and Tiffani L. Williams",
}

@article{muller,
    author  = "Wolfgang Müller and Isabel Rojas and Andreas Eberhart and Peter Haase and Michael Schmidt",
    title   = "{A-R-E}: {T}he {A}uthor-{R}eview-{E}xecute {E}nvironment",
    journal = "Procedia Computer Science",
    volume = "4",
    pages = "627 - 636",
    year = "2011",
    note = "Proceedings of the International Conference on Computational Science, ICCS 2011",
    issn = "1877-0509",
    doi = "10.1016/j.procs.2011.04.066",
    url = "http://www.sciencedirect.com/science/article/pii/S1877050911001244",
}

@article{nowakowski,
    author = "Piotr Nowakowski and Eryk Ciepiela and Daniel Harężlak and Joanna Kocot and Marek Kasztelnik and Tomasz Bartyński and Jan Meizner and Grzegorz Dyk and Maciej Malawski",
    title = "{T}he {C}ollage {A}uthoring {E}nvironment",
    journal = "Procedia Computer Science",
    volume = "4",
    pages = "608 - 617",
    year = "2011",
    note = "Proceedings of the International Conference on Computational Science, ICCS 2011",
    issn = "1877-0509",
    doi = "10.1016/j.procs.2011.04.064",
    url = "http://www.sciencedirect.com/science/article/pii/S1877050911001220",
}

@article{vangorp,
    title = "{SHARE}: a web portal for creating and sharing executable research papers",
    journal = "Procedia Computer Science",
    volume = "4",
    pages = "589 - 597",
    year = "2011",
    note = "Proceedings of the International Conference on Computational Science, ICCS 2011",
    issn = "1877-0509",
    doi = "10.1016/j.procs.2011.04.062",
    url = "http://www.sciencedirect.com/science/article/pii/S1877050911001207",
    author = "Pieter Van Gorp and Steffen Mazanek",
}

@article{koop,
    title = "A Provenance-Based Infrastructure to Support the Life Cycle of Executable Papers",
    journal = "Procedia Computer Science",
    volume = "4",
    pages = "648 - 657",
    year = "2011",
    note = "Proceedings of the International Conference on Computational Science, ICCS 2011",
    issn = "1877-0509",
    doi = "10.1016/j.procs.2011.04.068",
    url = "http://www.sciencedirect.com/science/article/pii/S1877050911001268",
    author = "David Koop and Emanuele Santos and Phillip Mates and Huy T. Vo and Philippe Bonnet and Bela Bauer and Brigitte Surer and Matthias Troyer and Dean N. Williams and Joel E. Tohline and Juliana Freire and Cláudio T. Silva",
}

@article{brandt,
    title = "The {P}rickly {P}ear {A}rchive",
    journal = "Procedia Computer Science",
    volume = "4",
    pages = "750 - 758",
    year = "2011",
    note = "Proceedings of the International Conference on Computational Science, ICCS 2011",
    issn = "1877-0509",
    doi = "10.1016/j.procs.2011.04.079",
    url = "http://www.sciencedirect.com/science/article/pii/S1877050911001372",
    author = "Steven R. Brandt and Oleg Korobkin and Frank Löffler and Jian Tao and Erik Schnetter and Ian Hinder and Dennis Castleberry and Michael Thomas",
}

@inProceedings{allen,
  author =       {Tom Goodale and Gabrielle Allen and Gerd Lanfermann
                  and Joan Mass{\'o} and Thomas Radke and Edward
                  Seidel and John Shalf},
  title =        {The {Cactus} Framework and Toolkit: Design and
                  Applications},
  booktitle =    {Vector and Parallel Processing -- VECPAR'2002, 5th
                  International Conference, Lecture Notes in Computer
                  Science},
  year =         2003,
  address =      {Berlin},
  publisher =    {Springer},
  url =          {http://edoc.mpg.de/3341},
}

@Misc{SimFactory:web,
  key =          {SimFactory},
  title =        {{SimFactory}: Herding Numerical Simulations},
  note =          {\url{http://simfactory.org/}},
}

@inproceedings{Thomas:2010aa,
  author={Thomas, M.W. and Schnetter, E.},
  booktitle={Grid Computing (GRID), 2010 11th IEEE/ACM International Conference on},
  title={Simulation Factory: Taming application configuration and workflow on high-end resources},
  year={2010},
  month={oct.},
  volume={},
  number={},
  pages={369 -378},
  doi={10.1109/GRID.2010.5698010},
  eprint =       {arXiv:1008.4571 [cs.DC]},
}

@Article{Husa:2004ip,
  author =       "Husa, Sascha and Hinder, Ian and Lechner,
                  Christiane",
  title =        "{Kranc: a Mathematica application to generate
                  numerical codes for tensorial evolution equations}",
  journal =      "Comput. Phys. Commun.",
  volume =       174,
  year =         2006,
  pages =        "983-1004",
  eprint =       "arXiv:gr-qc/0404023",
  SLACcitation = "%%CITATION = GR-QC/0404023;%%"
}

@Misc{Kranc:web,
  suggested-for ="McLachlan/ML_BSSN",
  key =          {Kranc},
  title =        {{Kranc}: {Kranc} Assembles Numerical Code},
  note =          {\url{http://kranccode.org/}},
}

@misc{hdf5,
  author  = {The HDF Group},
  title   = {Hierarchical data format version 5, 2000-2010},
  note    = {\url{http://www.hdfgroup.org/HDF5}},
}

@misc{elsevier_exepaperchallenge,
  author  = {Elsevier},
  title   = {Executable paper grand challenge},
  note    = {\url{http://www.executablepapers.com/}},
  year    = {2011},
}

@article{Loffler:2011ay,
      author         = "L{\"{o}}ffler, Frank and Faber, Joshua and Bentivegna, Eloisa
                        and Bode, Tanja and Diener, Peter and Haas, Roland and Hinder,
                        Ian and Mundim, Bruno C. and Ott, Christian D. and Schnetter,
                        Erik and Allen, Gabrielle and Campanelli, Manuela and Laguna, Pablo",
      title          = "{{T}he {E}instein {T}oolkit: {A} {C}ommunity {C}omputational
                        {I}nfrastructure for {R}elativistic {A}strophysics}",
      year           = "2011",
      eprint         = "arXiv:1111.3344 [gr-qc]",
}

@article{Schnetter:2003rb,
  requested-for ="Carpet/Carpet",
  author =       "Schnetter, Erik and Hawley, Scott H. and Hawke, Ian",
  title =        "{Evolutions in 3-D numerical relativity using fixed
                  mesh refinement}",
  journal =      "Class. Quantum Grav.",
  volume =       21,
  pages =        "1465-1488",
  doi =          "10.1088/0264-9381/21/6/014",
  year =         2004,
  eprint =       "arXiv:gr-qc/0310042",
}

@Misc{CarpetCode:web,
  key =          {Carpet},
  suggested-for ={Carpet/Carpet},
  title =         {{Carpet}: Adaptive Mesh Refinement for the {Cactus}
                  Framework},
  note =          {\url{http://www.carpetcode.org/}},
}

@Misc{EinsteinToolkit:web,
  key =          {EinsteinToolkit},
  title =        {{Einstein Toolkit}: Open software for relativistic
                  astrophysics},
  note =          {\url{http://einsteintoolkit.org/}},
}

@misc{mojave,
  author = "Hari Krishnan and Dennis G. Castleberry and Steven R. Brandt",
  title = "{M}ojave: A Development Environment for the Cactus Computational Framework",
  note = "submitted to XSEDE12: Bridging from the Campus to the Extreme and Beyond"
}