@string{jgr = "J.~Geophys.~Res."}

@InProceedings{ hpcneeds,
  author    = "Van De Vanter, M.L. and Post, DE and Zosel, M.E.",
  title     = "H{PC} needs a tool strategy",
  booktitle = "Proceedings of the Second International workshop on Software Engineering for High Perforrmance Computing System Application", 
               
  pages     = "55-59",
    year      = "2003",
organization="ACM"
}
@article{Basili,
 author = {Basili, Victor R. and Carver, Jeffrey C. and Cruzes, Daniela and Hochstein, Lorin M. and Hollingsworth, Jeffrey K. and Shull, Forrest and Zelkowitz, Marvin V.},
 title = {Understanding the High-Performance-Computing Community: A Software Engineer's Perspective},
 journal = {IEEE Softw.},
 issue_date = {July 2008},
 volume = {25},
 number = {4},
 month = jul,
 year = {2008},
 issn = {0740-7459},
 pages = {29--36},
 numpages = {8},
 url = {http://dx.doi.org/10.1109/MS.2008.103},
 doi = {10.1109/MS.2008.103},
 acmid = {1383170},
 publisher = {IEEE Computer Society Press},
 address = {Los Alamitos, CA, USA},
 keywords = {high-performance computing, computational science, empirical software engineering, productivity},
} 

@INPROCEEDINGS{initptp, 
author={Watson, G.R. and Debardeleben, N.A.}, 
booktitle={Cluster Computing, 2006 IEEE International Conference on}, title={A Model-Based Framework for the Integration of Parallel Tools}, 
year={2006}, 
month={sept.}, 
volume={}, 
number={}, 
pages={1 -11}, 
keywords={API architecture;Eclipse Parallel Tools Platform;Emacs style editors;command-line tools;high performance computing;model-view-controller design;parallel computing;parallel runtime system;parallel scientific applications;parallel software development;parallel tools;scientific computing applications;application program interfaces;natural sciences computing;parallel processing;software architecture;software tools;}, 
doi={10.1109/CLUSTR.2006.311883}, 
ISSN={1552-5244},}
@inproceedings{humphrey2010gem,
  title={GEM: graphical explorer of MPI programs},
  author={Humphrey, A. and Derrick, C. and Gopalakrishnan, G. and Tibbitts, B.},
  booktitle={Parallel Processing Workshops (ICPPW), 2010 39th International Conference on},
  pages={161--168},
  year={2010},
  organization={IEEE}
}
@ARTICLE{watsonsaying, 
author={Watson, G.R. and DeBardeleben, N.A.}, 
journal={Computing in Science Engineering}, title={Developing scientific applications using eclipse}, 
year={2006}, 
month={july-aug }, 
volume={8}, 
number={4}, 
pages={50 -61}, 
keywords={Eclipse;parallel computing;scientific application development;user interface;natural sciences computing;user interface management systems;}, 
doi={10.1109/MCSE.2006.64}, 
ISSN={1521-9615},}
@INPROCEEDINGS{PTP, 
author={Watson, G.R. and Rasmussen, C.E. and Tibbitts, B.R.}, 
booktitle={Parallel Distributed Processing, 2009. IPDPS 2009. IEEE International Symposium on}, title={An integrated approach to improving the parallel application development process}, 
year={2009}, 
month={may}, 
volume={}, 
number={}, 
pages={1 -8}, 
keywords={MPI code;clock scaling;feature-size reduction;message passing interface;multicore technologies;multiprocessor technologies;parallel application development process;parallel programming;parallel tools platform project;application program interfaces;message passing;parallel programming;}, 
doi={10.1109/IPDPS.2009.5160941}, 
ISSN={1530-2075},}

@ARTICLE{Thomas:2010aa,
  author={Thomas, M.W. and Schnetter, E.},
  booktitle={Grid Computing (GRID), 2010 11th IEEE/ACM International Conference on},
  title={Simulation Factory: Taming application configuration and workflow on high-end resources},
  year={2010},
  month={oct.},
  volume={},
  number={},
  pages={369 -378},
  doi={10.1109/GRID.2010.5698010},
  eprint =       {arXiv:1008.4571 [cs.DC]},
}

@Misc{SimFactory:web,
  key =          {SimFactory},
  title =        {{SimFactory}: Herding Numerical Simulations},
  note =          {\url{http://simfactory.org/}},
}


@article {Hudak:CSIDE,
   author = {Hudak, David and Ludban, Neil and Krishnamurthy, Ashok and Gadepally, Vijay and Samsi, Siddharth and Nehrbass, John},
   affiliation = {Ohio Supercomputer Center 1224 Kinnear Road Columbus OH 43212 USA},
   title = {A Computational Science IDE for HPC Systems: Design and Applications},
   journal = {International Journal of Parallel Programming},
   publisher = {Springer Netherlands},
   issn = {0885-7458},
   keyword = {Computer Science},
   pages = {91-105},
   volume = {37},
   issue = {1},
   url = {http://dx.doi.org/10.1007/s10766-008-0084-3},
   note = {10.1007/s10766-008-0084-3},
   year = {2009}
}
@inproceedings{cactus, 
  author =       {Tom Goodale and Gabrielle Allen and Gerd Lanfermann
                  and Joan Mass{\'o} and Thomas Radke and Edward
                  Seidel and John Shalf},
  title =        {The {Cactus} Framework and Toolkit: Design and
                  Applications},
  booktitle =    {Vector and Parallel Processing -- VECPAR'2002, 5th
                  International Conference, Lecture Notes in Computer
                  Science},
  year =         2003,
  address =      {Berlin},
  publisher =    {Springer},
  url =          {http://edoc.mpg.de/3341},
}
@inproceedings{granger:case, 
  author =       {M. J. Granger and R. A. Pick}, 
  title =        {Computer-aided Software Engineering's Impact on the Software Development Process : An Experiment}, 
  booktitle =    {Proceedings of the 24th Hawaii International Conference on System Sciences}, 
    
  year =         "January 1991", 
  pages ="28-35"
}
@INPROCEEDINGS{luckey:case, 
author={Luckey, P.H. and Pittman, R.M.}, 
booktitle={Aerospace and Electronics Conference, 1991. NAECON 1991., Proceedings of the IEEE 1991 National}, title={Improving software quality utilizing an integrated CASE environment }, 
year={1991}, 
month={may}, 
volume={}, 
number={}, 
pages={665 -671 vol.2}, 
keywords={Ada;IBM;Real-Time Curriculum;computer-aided software engineering;heterogeneous environment;integrated CASE environment;integrated environment;object-oriented domain models;programming environment;reusable models;software development;vendor products;programming environments;software tools;}, 
doi={10.1109/NAECON.1991.165822}, 
ISSN={},}
@inproceedings{Snir:hpc,
  author={F. Kjolstad, D. Dig and M. Snir},
  title={{Bringing the HPC Programmer's IDE into the 21st Century through Refactoring}},
  year={2010},
  month={Oct.},
  booktitle={SPLASH 2010 Workshop on Concurrency for the Application Programmer (CAP'10)},
  location={Reno, Nevada},
  publisher={Association for Computing Machinery (ACM)},
}
@INPROCEEDINGS{frazer:case, 
author={Frazer, A.}, 
booktitle={Layman's Guide to Software Quality, IEE Colloquium on}, title={CASE and its contribution to quality}, 
year={1993}, 
month={dec}, 
volume={}, 
number={}, 
pages={6/1 -6/4}, 
keywords={ CASE; software productivity; software quality; software quality; software tools;}, 
doi={}, 
ISSN={},}
@INPROCEEDINGS{Beetle-Diagnosis-Flairs07,
    TITLE = "The Beetle and BeeDiff Tutoring Systems",
    AUTHOR = "Charles B. Callaway and Myroslava Dzikovska and Elaine Farrow and
              Manuel Marques-Pita and Colin Matheson and Johanna D. Moore",
    BOOKTITLE = "Proceedings of the 2007 Workshop on Spoken Language Technology for Education (SLaTE)",
    ADDRESS = "Farmington, Pennsylvania, USA",
    MONTH = "September",
    YEAR = "2007"}


@INPROCEEDINGS{Beetle-LeAM-Slate-2007,
    TITLE = "The Beetle and BeeDiff Tutoring Systems",
    AUTHOR = "Charles B. Callaway and Myroslava Dzikovska and Elaine Farrow and
              Manuel Marques-Pita and Colin Matheson and Johanna D. Moore",
    BOOKTITLE = "Proceedings of the 2007 Workshop on Spoken Language Technology for Education (SLaTE)",
    ADDRESS = "Farmington, Pennsylvania, USA",
    MONTH = "September",
    YEAR = "2007"}

@inproceedings{casestudy,
 author = {Hochstein, Lorin and Carver, Jeff and Shull, Forrest and Asgari, Sima and Basili, Victor},
 title = {Parallel Programmer Productivity: A Case Study of Novice Parallel Programmers},
 booktitle = {Proceedings of the 2005 ACM/IEEE conference on Supercomputing},
 series = {SC '05},
 year = {2005},
 isbn = {1-59593-061-2},
 pages = {35--},
 url = {http://dx.doi.org/10.1109/SC.2005.53},
 doi = {10.1109/SC.2005.53},
 acmid = {1105800},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
} 

@UNPUBLISHED{btxdoc,
   author = "Oren Patashnik",
   title = "{Using BibTeX}",
   note = "Documentation for general BibTeX users",
   month = jan,
   year = 1988
   }

@UNPUBLISHED{btxhak,
   author = "Oren Patashnik",
   title = "Designing BibTeX Styles",
   note = "The part of BibTeX's documentation
                            that's not meant for general users",
   month = jan,
   year = 1988
   }

@BOOK{strunk,
   author = "Strunk, Jr., William and E. B. White",
   title = "The Elements of Style",
   publisher = "Macmillan",
   edition = "Third",
   year = 1979
   }

@book{vanleunen,
   title = "A Handbook for Scholars",
   author = "Mary-Claire van Leunen",
   publisher = "Knopf",
   year = "1979"
   }

@ARTICLE{Zurek:1993,
   AUTHOR  = {Zurek, R. W. and Martin, L. J.},
   TITLE   = {Interannual Variability of planet-encircling dust activity on {M}ars},  
   YEAR    = {1993},
   JOURNAL = jgr,
   VOLUME  = {98},
   NUMBER  = {E2},
   PAGES   = {3247--3259}
}

@Article{Narendra_1990,
  author =       {K.S.Narendra and K.Parthsarathy},
  title =        {Identification and Control of Dynamical System
                  using Neural Networks},
  journal =      "IEENN",
  year =         {1990},
  volume =    {1},
  number =    {1},
  month =     {},
  pages =     {4-27},
  note =      {},
  annote =    {}
}

@Article{Diener,
  author =       {Diener, P. and Herrman, F. and Pollney, D. and Schnetter, E. and Seidel, E. and Takahashi, R. and Thornburg, J. and Ventralla, J.}, 
  title =        {Accurate Evolution of Orbiting Binary Black Holes},
  journal =      "Phys. Rev. Lett.",
  year =         {2005},
  volume =    {96},
}

@Article{Koppitz,
  author =       {Koppitz, M. and Pollney, D. and Reisswig, C. and Rezzolla, L. and Thornburg, J. and Diener, P. and Schentter, E.}, 
  title =        {Recoil Velocities from Equal-Mass Binary-Black-Hole Mergers},
  journal =      "Phys. Rev. Lett.",
  year =         {2007},
  volume =    {99},
}

@Article{Ott,
  author =       {Ott, C. and Reisswig, C. and Schnetter, E. and O'Connor, E. and Sperhake, U. and L\"offler, F. and Diener, P. and Abdikamalov, E. and Hawke, I. and Burrows, A.} 
  title =        {Dynamics and Gravitational Wave Signature of Collapsar Formation},
  journal =      "Phys. Rev. Lett.",
  year =         {2011},
  volume =    {106},
}

@Article{Diener2,
  author =       {Diener, P. and Vega, I. and Wardell, B. and Detweiler, S.},
  title =        {Self-consistent orbital evolution of a particle around a Schwarzschild black hole},
  journal =      "Phys. Rev. Lett.",
  year =         {2012},
  volume =    {108},
}

@inproceedings{overbey2005refactorings,
  title={Refactorings for Fortran and high-performance computing},
  author={Overbey, J. and Xanthos, S. and Johnson, R. and Foote, B.},
  booktitle={Proceedings of the second international workshop on Software engineering for high performance computing system applications},
  pages={37--39},
  year={2005},
  organization={ACM}
}

@Misc{etk-workshop,
  author =       {Frank L\:{o}ffler and Tanja Bode and Roland Haas},
  title =        {The Einstein Toolkit Workshop},
  year =         2012,
  month =        April,
  location =     {Georgia Tech Student Center, Georgia Tech},
  note =         {\url{https://docs.einsteintoolkit.org/et-docs/ET_Workshop_Spring_2012}},
}

@Misc{gordonbell,
  author =       {Association for Computing Machinery},
  title =        {Gordon Bell Prize 2011 Awards},
  year =         2011,
  note =         {\url{http://awards.acm.org/homepage.cfm?awd=160}},
}

@Misc{envmodules,
  author =       {John Furlani, Peter Osel},
  title =        {The Environment Modules Project},
  year =         1996,
  note =         {\url{http://modules.sourceforge.net}},
}